Genomic sequence analysis using gap sequences and pattern filtering

S. C. Su, C. H. Yeh, C. C. Jay Kuo

研究成果: 書貢獻/報告類型會議論文篇章

1 引文 斯高帕斯(Scopus)

摘要

A new pattern filtering technique is developed to analyze the genomic sequence in this research based on gap sequences, in which the distance of the same symbol is recorded consecutively as a sequence of integers. Sequence alignment and similarity testing can be performed on a family of gap sequences over selected patterns. The gap sequence offers a new way for sequence structural analysis. The match between the gap sequences is considered as a frame match while a true match requires both frame and stuffing match. Simulation results show that the extension of gap match indicates the corresponding segment extension in the original genomic sequence. Thus, we are able to generalize the conventional alignment and scoring methods in a more adaptive way.

原文英語
主出版物標題Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003
發行者Institute of Electrical and Electronics Engineers Inc.
頁面539-540
頁數2
ISBN(電子)0769520006, 9780769520001
DOIs
出版狀態已發佈 - 2003
對外發佈
事件2nd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2003 - Stanford, 美国
持續時間: 2003 8月 112003 8月 14

出版系列

名字Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003

會議

會議2nd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2003
國家/地區美国
城市Stanford
期間2003/08/112003/08/14

ASJC Scopus subject areas

  • 電氣與電子工程
  • 電腦科學應用

指紋

深入研究「Genomic sequence analysis using gap sequences and pattern filtering」主題。共同形成了獨特的指紋。

引用此