TY - GEN
T1 - Genomic sequence analysis using gap sequences and pattern filtering
AU - Su, S. C.
AU - Yeh, C. H.
AU - Jay Kuo, C. C.
N1 - Publisher Copyright:
© 2003 IEEE.
PY - 2003
Y1 - 2003
N2 - A new pattern filtering technique is developed to analyze the genomic sequence in this research based on gap sequences, in which the distance of the same symbol is recorded consecutively as a sequence of integers. Sequence alignment and similarity testing can be performed on a family of gap sequences over selected patterns. The gap sequence offers a new way for sequence structural analysis. The match between the gap sequences is considered as a frame match while a true match requires both frame and stuffing match. Simulation results show that the extension of gap match indicates the corresponding segment extension in the original genomic sequence. Thus, we are able to generalize the conventional alignment and scoring methods in a more adaptive way.
AB - A new pattern filtering technique is developed to analyze the genomic sequence in this research based on gap sequences, in which the distance of the same symbol is recorded consecutively as a sequence of integers. Sequence alignment and similarity testing can be performed on a family of gap sequences over selected patterns. The gap sequence offers a new way for sequence structural analysis. The match between the gap sequences is considered as a frame match while a true match requires both frame and stuffing match. Simulation results show that the extension of gap match indicates the corresponding segment extension in the original genomic sequence. Thus, we are able to generalize the conventional alignment and scoring methods in a more adaptive way.
UR - http://www.scopus.com/inward/record.url?scp=36448961301&partnerID=8YFLogxK
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U2 - 10.1109/CSB.2003.1227401
DO - 10.1109/CSB.2003.1227401
M3 - Conference contribution
AN - SCOPUS:36448961301
T3 - Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003
SP - 539
EP - 540
BT - Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2nd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2003
Y2 - 11 August 2003 through 14 August 2003
ER -