5GUN : Crystal structure of d(GTGGAATGGAAC)

  • Ming Hon Hou (Contributor)
  • Ya Fen Kao (Contributor)

資料集

Description

Experimental Technique/Method:X-RAY DIFFRACTION
Resolution:2.59
Classification:DNA
Release Date:2017-08-30
Deposition Date:2016-08-29
Revision Date:2017-09-20
Molecular Weight:22980.26
Macromolecule Type:DNA
Residue Count:72
Atom Site Count:1508
DOI:10.2210/pdb5gun/pdb

Abstract:
Repetitive DNA sequences are ubiquitous in life, and changes in the number of repeats often have various physiological and pathological implications. DNA repeats are capable of interchanging between different noncanonical and canonical conformations in a dynamic fashion, causing configurational slippage that often leads to repeat expansion associated with neurological diseases. In this report, we used single-molecule spectroscopy together with biophysical analyses to demonstrate the parity-dependent hairpin structural polymorphism of TGGAA repeat DNA. We found that the DNA adopted two configurations depending on the repeat number parity (even or odd). Transitions between these two configurations were also observed for longer repeats. In addition, the ability to modulate this transition was found to be enhanced by divalent ions. Based on the atomic structure, we propose a local seeding model where the kinked GGA motifs in the stem region of TGGAA repeat DNA act as hot spots to facilitate the transition between the two configurations, which may give rise to disease-associated repeat expansion.
可用日期2017 八月 30
發行者Unknown Publisher

引用此