Testing hypotheses of mitochondrial gene-tree paraphyly: Unravelling mitochondrial capture of the Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) by the Taiwan Scimitar Babbler (Pomatorhinus musicus)

Feng Dong, Fa Sheng Zou, Fu Min Lei, Wei Liang, Shou Hsien Li, Xiao Jun Yang

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Species-level paraphyly inferred from mitochondrial gene trees is a prevalent phenomenon in taxonomy and systematics, but there are several potential causes that are not easily explained by currently used methods. This study aimed to test the underlying causes behind the observed paraphyly of Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) via statistical analyses of four mitochondrial (mtDNA) and nine nuclear (nuDNA) genes. Mitochondrial gene trees show paraphyly of P. ruficollis with respect to the Taiwan Scimitar Babbler (Pomatorhinus musicus), but nuclear genealogies support a sister-group relationship. Predictive coalescent simulations imply several hypothetical explanations, the most likely being mitochondrial capture of P. ruficollis by P. musicus for the observed cyto-nuclear incongruence. Further approximate Bayesian computation suggests a unidirectional introgression model with substantial level of gene flow from P. ruficollis to P. musicus during their initial divergence during the Late Pleistocene. This specific observation frames several potential causes for incongruent outcomes of mitochondrial and nuclear introgression in general, and on the whole, our results underscore the strength of multiple independent loci for species delimitation and importance of testing hypotheses that explain disparate causes of mitochondrial gene-tree paraphyly.

Original languageEnglish
Pages (from-to)5855-5867
Number of pages13
JournalMolecular Ecology
Volume23
Issue number23
DOIs
Publication statusPublished - 2014 Dec 1

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paraphyly
Mitochondrial Genes
hypothesis testing
Taiwan
gene
introgression
Genealogy and Heraldry
genes
Gene Flow
testing
taxonomy
Mitochondrial DNA
genealogy
Observation
gene flow
mitochondrial DNA
divergence
Pleistocene
loci
Genes

Keywords

  • approximate Bayesian computation
  • incomplete lineage sorting
  • introgressive hybridization
  • mitochondrial gene-tree paraphyly
  • predictive coalescent simulations

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics

Cite this

Testing hypotheses of mitochondrial gene-tree paraphyly : Unravelling mitochondrial capture of the Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) by the Taiwan Scimitar Babbler (Pomatorhinus musicus). / Dong, Feng; Zou, Fa Sheng; Lei, Fu Min; Liang, Wei; Li, Shou Hsien; Yang, Xiao Jun.

In: Molecular Ecology, Vol. 23, No. 23, 01.12.2014, p. 5855-5867.

Research output: Contribution to journalArticle

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