Potential refugia in Taiwan revealed by the phylogeographical study of Castanopsis carlesii Hayata (Fagaceae)

Yu Pin Cheng, Shih Ying Hwang, Tsan Piao Lin

Research output: Contribution to journalArticle

73 Citations (Scopus)

Abstract

In this study, we examined spatial patterns of chloroplast DNA (cpDNA) variation in a total of 30 populations of Castanopsis carlesii Hayata (Fagaceae), a subtropical and temperate tree species, including 201 individuals sampled throughout Taiwan. By sequencing two cpDNA fragments using universal primers (the trnL intron and the trnV-trnM intergenic spacer), we found a total of 1663 bp and 21 polymorphic sites. These gave rise to a total of 28 cpDNA haplotypes. The level of differentiation among the populations studied was relatively high (G ST = 0.723). Two ancestral haplotypes are widely distributed. The Central Mountain Ridge (CMR) of Taiwan represents an insurmountable barrier to the east-west gene flow of C. carlesii. Among the populations studied, three separated populations, at Lienhuachih, Fushan and Lichia, have high nucleotide diversity. Estimates of N ST-G ST for populations on both sides of the CMR indicate that no phylogeographical structure exists. According to the genealogical tree, number of rare haplotype and population genetic divergence, this study suggests that two potential refugia existed during the last glaciation: the first refugium was located in a region to the north of Hsuehshan Range (HR) and west of the CMR; the second refugium was located in south, especially southeastern Taiwan. In fact, the second refugium happens to be the same as that reported for Quercus glauca. A 'star-like' genealogy is characteristic when all haplotypes rapidly coalesce and is a general outcome of population expansion. The neutrality test and mismatch distribution also suggest demographic expansion recovering from a bottleneck.

Original languageEnglish
Pages (from-to)2075-2085
Number of pages11
JournalMolecular Ecology
Volume14
Issue number7
DOIs
Publication statusPublished - 2005 Jun 1

Fingerprint

Fagaceae
Castanopsis
refugium
refuge habitats
Taiwan
chloroplast
Chloroplast DNA
Haplotypes
haplotypes
chloroplast DNA
DNA
Population
mountain
mountains
genealogy
last glaciation
Quercus glauca
population genetics
gene flow
Genealogy and Heraldry

Keywords

  • Castanopsis carlesii Hayata
  • Phylogeography
  • Refugium
  • Taiwan
  • cpDNA

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics

Cite this

Potential refugia in Taiwan revealed by the phylogeographical study of Castanopsis carlesii Hayata (Fagaceae). / Cheng, Yu Pin; Hwang, Shih Ying; Lin, Tsan Piao.

In: Molecular Ecology, Vol. 14, No. 7, 01.06.2005, p. 2075-2085.

Research output: Contribution to journalArticle

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