Population genetic structure, local adaptation, and conservation genetics of Kandelia obovata

Yu Ruan, Bing Hong Huang, Shih Jie Lai, Yu Ting Wan, Jun Qing Li, Shong Huang, Pei-Chun Liao

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Topographic changes during the Pleistocene glacial/interglacial cycles affected the distribution of coastline mangroves and influenced their population genetic structure. The submergence of the continental shelf off southeast China during the postglacial age caused coastline expansions and resulted in the colonization of mangroves. Here, we performed multilocus genome scans using amplified fragment-length polymorphisms to explore the effects of topography and natural selection in structuring Kandelia obovata populations. Long-term isolation by the Taiwan Strait since the end of the last glacial maximum, which obstructed gene flow, differentiated the Taiwanese and Chinese populations. Founders that colonized from both outlets of the Taiwan Strait were sourced from the northern South China Sea and the Ryukyus, thereby creating a melting pot in the Taiwan Strait. Inner-strait currents played roles as vectors for propagule dispersal among populations. Upon examination of the allele-frequency distributions of outlier loci, most negative outliers reflected the widespread polymorphisms shared by common ancestors. Furthermore, significant differentiation in the genetic components of positive outliers between this and other populations and the negative correlation with geographic distance suggested the presence of geography- or latitude-independent population divergence. Restored populations were compared with their sources and revealed biased sampling of nursery seedlings, which caused within-population substructures and reduced effective population sizes. This study indicated that multiple factors affect the population structure of the mangroves off southeast China.

Original languageEnglish
Pages (from-to)913-925
Number of pages13
JournalTree Genetics and Genomes
Volume9
Issue number4
DOIs
Publication statusPublished - 2013 Aug 1

Fingerprint

Rhizophoraceae
conservation genetics
Genetic Structures
local adaptation
Population Genetics
germplasm conservation
genetic structure
population genetics
strait
outlier
mangrove
Population
polymorphism
Taiwan
China
glacial-interglacial cycle
propagule
coast
effective population size
submergence

Keywords

  • AFLP
  • Demographic effect
  • Kandelia obovata
  • Population structure
  • Topographic effect

ASJC Scopus subject areas

  • Forestry
  • Molecular Biology
  • Genetics
  • Horticulture

Cite this

Population genetic structure, local adaptation, and conservation genetics of Kandelia obovata. / Ruan, Yu; Huang, Bing Hong; Lai, Shih Jie; Wan, Yu Ting; Li, Jun Qing; Huang, Shong; Liao, Pei-Chun.

In: Tree Genetics and Genomes, Vol. 9, No. 4, 01.08.2013, p. 913-925.

Research output: Contribution to journalArticle

Ruan, Yu ; Huang, Bing Hong ; Lai, Shih Jie ; Wan, Yu Ting ; Li, Jun Qing ; Huang, Shong ; Liao, Pei-Chun. / Population genetic structure, local adaptation, and conservation genetics of Kandelia obovata. In: Tree Genetics and Genomes. 2013 ; Vol. 9, No. 4. pp. 913-925.
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