Historical demography of four gecko species specializing in boulder cave habitat: Implications in the evolutionary dead end hypothesis and conservation

Hung N. Nguyen, Chia Wei Lu, Jui Hua Chu, Larry Lee Grismer, Chih Ming Hung, Si Min Lin

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Specialization in narrow ecological niches may not only help species to survive in competitive or unique environments but also contribute to their extermination over evolutionary time. Although the “evolutionary dead end” hypothesis has long been debated, empirical evidence from species with detailed information on niche specialization and evolutionary history remains rare. Here we use a group of four closely related Cnemaspis gecko species that depend highly on granite boulder caves in the Mekong Delta to investigate the potential impact of ecological specialization on their evolution and population dynamics. Isolated by unsuitable floodplain habitats, these boulder-dwelling geckos are among the most narrowly distributed Squamata in the world. We applied several coalescence-based approaches combined with the RAD-seq technique to estimate their divergence times, gene flow and demographic fluctuations during the speciation and population differentiation processes. Our results reveal long-term population shrinkage in the four geckos and limited gene flow during their divergence. The results suggest that the erosion and fragmentation of the granite boulder hills have greatly impacted population divergence and declines. The habitat specialization of these geckos has led to fine-scaled speciation in these granite rocky hills; in contrast, specialization might also have pushed these species toward the edge of extinction. Our study also emphasizes the conservation urgency of these vulnerable, cave-dependent geckos.

Original languageEnglish
Pages (from-to)772-784
Number of pages13
JournalMolecular Ecology
Volume28
Issue number4
DOIs
Publication statusPublished - 2019 Feb 1

Fingerprint

Lizards
Gekkonidae
boulder
demography
caves
Ecosystem
cave
Demography
granite
habitat
habitats
Gene Flow
divergence
gene flow
niches
Population
Squamata
Population Dynamics
coalescence
shrinkage

Keywords

  • RAD-seq
  • cave-dwelling species
  • demographic history
  • gene flow
  • speciation

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics

Cite this

Historical demography of four gecko species specializing in boulder cave habitat : Implications in the evolutionary dead end hypothesis and conservation. / Nguyen, Hung N.; Lu, Chia Wei; Chu, Jui Hua; Grismer, Larry Lee; Hung, Chih Ming; Lin, Si Min.

In: Molecular Ecology, Vol. 28, No. 4, 01.02.2019, p. 772-784.

Research output: Contribution to journalArticle

Nguyen, Hung N. ; Lu, Chia Wei ; Chu, Jui Hua ; Grismer, Larry Lee ; Hung, Chih Ming ; Lin, Si Min. / Historical demography of four gecko species specializing in boulder cave habitat : Implications in the evolutionary dead end hypothesis and conservation. In: Molecular Ecology. 2019 ; Vol. 28, No. 4. pp. 772-784.
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