Genetic variations and expansion of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence

Ta Jen Chu; Daryi Wang; Hsien Lu Haung; Feng Jiau Lin; Ching Ming Wang; Chun Han Shih; Tzong Der Tzeng

doi:10.1016/j.bse.2011.07.011

Genetic variations and expansion of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence

Ta Jen Chu, Daryi Wang, Hsien Lu Haung, Feng Jiau Lin, Ching Ming Wang, Chun Han Shih, Tzong Der Tzeng^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Abstract

Sequence analyses on the intron from the elongation factor-1α gene were conducted to examine the population structure and historical demography of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan. Five samples including 155 individuals were separately collected from the north of East China Sea (ECS), waters off Taichung (TC), Cheding (CD), Xiamen (XM) and Hongkong (HK) and 41 alleles were identified. All F_ST values between five samples were significant except the pair of TC-CD. Neighbor-joining tree and network of 41 alleles showed no significant genealogical structure. UPGMA tree of five sampling areas showed three distinct groups. One included the NECS; another contained TC and CD; the other included HK and XM. Both Tajima's D and Fu's F statistics and analysis of mismatch distribution for overall alleles suggested that this species in studied areas had experienced population expansion.

Original language	English
Pages (from-to)	520-525
Number of pages	6
Journal	Biochemical Systematics and Ecology
Volume	39
Issue number	4-6
DOIs	https://doi.org/10.1016/j.bse.2011.07.011
Publication status	Published - 2011 Aug

Keywords

China
Historical demography
Intron of elongation factor-1α gene
Metapenaeopsis barbata
Population structure
Tawian

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Biochemistry

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10.1016/j.bse.2011.07.011

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@article{7609c45c9529453eba5927ece5d8207b,

title = "Genetic variations and expansion of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence",

abstract = "Sequence analyses on the intron from the elongation factor-1α gene were conducted to examine the population structure and historical demography of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan. Five samples including 155 individuals were separately collected from the north of East China Sea (ECS), waters off Taichung (TC), Cheding (CD), Xiamen (XM) and Hongkong (HK) and 41 alleles were identified. All FST values between five samples were significant except the pair of TC-CD. Neighbor-joining tree and network of 41 alleles showed no significant genealogical structure. UPGMA tree of five sampling areas showed three distinct groups. One included the NECS; another contained TC and CD; the other included HK and XM. Both Tajima's D and Fu's F statistics and analysis of mismatch distribution for overall alleles suggested that this species in studied areas had experienced population expansion.",

keywords = "China, Historical demography, Intron of elongation factor-1α gene, Metapenaeopsis barbata, Population structure, Tawian",

author = "Chu, {Ta Jen} and Daryi Wang and Haung, {Hsien Lu} and Lin, {Feng Jiau} and Wang, {Ching Ming} and Shih, {Chun Han} and Tzeng, {Tzong Der}",

note = "Funding Information: We would like to express gratitude for the funding support by a grant (NSC97-2313-B-336-001) from the National Science Council of Taiwan . The authors are also grateful to the reviewers{\textquoteright} critical comments on the manuscript.",

year = "2011",

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doi = "10.1016/j.bse.2011.07.011",

language = "English",

volume = "39",

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T1 - Genetic variations and expansion of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence

AU - Chu, Ta Jen

AU - Wang, Daryi

AU - Haung, Hsien Lu

AU - Lin, Feng Jiau

AU - Wang, Ching Ming

AU - Shih, Chun Han

AU - Tzeng, Tzong Der

N1 - Funding Information: We would like to express gratitude for the funding support by a grant (NSC97-2313-B-336-001) from the National Science Council of Taiwan . The authors are also grateful to the reviewers’ critical comments on the manuscript.

PY - 2011/8

Y1 - 2011/8

N2 - Sequence analyses on the intron from the elongation factor-1α gene were conducted to examine the population structure and historical demography of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan. Five samples including 155 individuals were separately collected from the north of East China Sea (ECS), waters off Taichung (TC), Cheding (CD), Xiamen (XM) and Hongkong (HK) and 41 alleles were identified. All FST values between five samples were significant except the pair of TC-CD. Neighbor-joining tree and network of 41 alleles showed no significant genealogical structure. UPGMA tree of five sampling areas showed three distinct groups. One included the NECS; another contained TC and CD; the other included HK and XM. Both Tajima's D and Fu's F statistics and analysis of mismatch distribution for overall alleles suggested that this species in studied areas had experienced population expansion.

AB - Sequence analyses on the intron from the elongation factor-1α gene were conducted to examine the population structure and historical demography of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan. Five samples including 155 individuals were separately collected from the north of East China Sea (ECS), waters off Taichung (TC), Cheding (CD), Xiamen (XM) and Hongkong (HK) and 41 alleles were identified. All FST values between five samples were significant except the pair of TC-CD. Neighbor-joining tree and network of 41 alleles showed no significant genealogical structure. UPGMA tree of five sampling areas showed three distinct groups. One included the NECS; another contained TC and CD; the other included HK and XM. Both Tajima's D and Fu's F statistics and analysis of mismatch distribution for overall alleles suggested that this species in studied areas had experienced population expansion.

KW - China

KW - Historical demography

KW - Intron of elongation factor-1α gene

KW - Metapenaeopsis barbata

KW - Population structure

KW - Tawian

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Genetic variations and expansion of whiskered velvet shrimp (Metapenaeopsis barbata) off China and Taiwan inferred from intron sequence

Abstract

Keywords

ASJC Scopus subject areas

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