Development of a broad-host synthetic biology toolbox for ralstonia eutropha and its application to engineering hydrocarbon biofuel production

Changhao Bi, Peter Su, Jana Müller, Yi-Chun Yeh, Swapnil R. Chhabra, Harry R. Beller, Steven W. Singer, Nathan J. Hillson

Research output: Contribution to journalArticle

41 Citations (Scopus)

Abstract

Background: The chemoautotrophic bacterium Ralstonia eutropha can utilize H2/CO2 for growth under aerobic conditions. While this microbial host has great potential to be engineered to produce desired compounds (beyond polyhydroxybutyrate) directly from CO2, little work has been done to develop genetic part libraries to enable such endeavors. Results: We report the development of a toolbox for the metabolic engineering of Ralstonia eutropha H16. We have constructed a set of broad-host-range plasmids bearing a variety of origins of replication, promoters, 5' mRNA stem-loop structures, and ribosomal binding sites. Specifically, we analyzed the origins of replication pCM62 (IncP), pBBR1, pKT (IncQ), and their variants. We tested the promoters PBAD, T7, Pxyls/PM, PlacUV5, and variants thereof for inducible expression. We also evaluated a T7 mRNA stem-loop structure sequence and compared a set of ribosomal binding site (RBS) sequences derived from Escherichia coli, R. eutropha, and a computational RBS design tool. Finally, we employed the toolbox to optimize hydrocarbon production in R. eutropha and demonstrated a 6-fold titer improvement using the appropriate combination of parts.Conclusion: We constructed and evaluated a versatile synthetic biology toolbox for Ralstonia eutropha metabolic engineering that could apply to other microbial hosts as well.

Original languageEnglish
Article number107
JournalMicrobial Cell Factories
Volume12
Issue number1
DOIs
Publication statusPublished - 2013 Nov 13

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Cupriavidus necator
Synthetic Biology
Biofuels
Binding sites
Hydrocarbons
Metabolic engineering
Replication Origin
Binding Sites
Metabolic Engineering
Bearings (structural)
Messenger RNA
Escherichia coli
Inverted Repeat Sequences
Bacteria
Plasmids
Host Specificity
Libraries
Growth

Keywords

  • Broad-host
  • Chemolithoautotroph
  • Hydrocarbon
  • Ralstonia eutropha
  • Synthetic biology

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology

Cite this

Development of a broad-host synthetic biology toolbox for ralstonia eutropha and its application to engineering hydrocarbon biofuel production. / Bi, Changhao; Su, Peter; Müller, Jana; Yeh, Yi-Chun; Chhabra, Swapnil R.; Beller, Harry R.; Singer, Steven W.; Hillson, Nathan J.

In: Microbial Cell Factories, Vol. 12, No. 1, 107, 13.11.2013.

Research output: Contribution to journalArticle

Bi, Changhao ; Su, Peter ; Müller, Jana ; Yeh, Yi-Chun ; Chhabra, Swapnil R. ; Beller, Harry R. ; Singer, Steven W. ; Hillson, Nathan J. / Development of a broad-host synthetic biology toolbox for ralstonia eutropha and its application to engineering hydrocarbon biofuel production. In: Microbial Cell Factories. 2013 ; Vol. 12, No. 1.
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