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Computation of relative binding free energy for an inhibitor and its analogs binding with erk kinase using thermodynamic integration md simulation
Kuan Wei Wu
, Po Chin Chen
, Jun Wang
,
Ying Chieh Sun
*
*
Corresponding author for this work
Department of Chemistry
Research output
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Contribution to journal
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Article
›
peer-review
25
Citations (Scopus)
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Dive into the research topics of 'Computation of relative binding free energy for an inhibitor and its analogs binding with erk kinase using thermodynamic integration md simulation'. Together they form a unique fingerprint.
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INIS
simulation
100%
ligands
100%
calculation methods
100%
thermodynamics
100%
kinases
100%
free energy
100%
charges
42%
affinity
42%
values
28%
interactions
14%
errors
14%
convergence
14%
rings
14%
enzymes
14%
benzene
14%
residues
14%
hydrogen
14%
bonding
14%
molecular dynamics method
14%
bcc lattices
14%
Chemistry
Kd
100%
Free Energy
100%
Hydrogen Bonding
50%
Benzene Ring
50%
Body-Centered Cubic Crystal System
50%
Molecular Dynamics Simulation
50%
Biochemistry, Genetics and Molecular Biology
Binding Affinity
100%
Kinase
100%
Phosphotransferase
100%
Enzyme
50%
Cell Assay
50%
Neuroscience
Kinase
100%
Binding Affinity
100%
Functional Group
50%
Material Science
Hydrogen Bonding
100%