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• 2020

  Disentangling the evolutionary history and biogeography of hill partridges (Phasianidae, Arborophila) from low coverage shotgun sequences

  Chen, D., Liu, Y., Davison, G., Yong, D. L., Gao, S., Hu, J., Li, S. H. & Zhang, Z., 2020 Oct, In: Molecular Phylogenetics and Evolution. 151, 106895.

  Research output: Contribution to journal › Article › peer-review

  • Phasianidae
  • partridges
  • Southeastern Asia
  • Firearms
  • global cooling
  1 Citation (Scopus)

• Strict allopatric speciation of sky island Pyrrhula erythaca species complex

  Dong, F., Li, S. H., Chiu, C. C., Dong, L., Yao, C. T. & Yang, X. J., 2020 Dec, In: Molecular Phylogenetics and Evolution. 153, 106941.

  Research output: Contribution to journal › Article › peer-review

  • Pyrrhula
  • allopatric speciation
  • species complex
  • Islands
  • Ecosystem
• 2019

  3D Scalable, Wake-up Free, and Highly Reliable FRAM Technology with Stress-Engineered HfZrO_x

  Lin, Y. D., Tang, Y. T., Sheu, S. S., Hou, T. H., Lo, W. C., Lee, M. H., Chang, M. F., King, Y. C., Lin, C. J., Lee, H. Y., Yeh, P. C., Yang, H. Y., Yeh, P. S., Wang, C. Y., Su, J. W. & Li, S. H., 2019 Dec, 2019 IEEE International Electron Devices Meeting, IEDM 2019. Institute of Electrical and Electronics Engineers Inc., 8993504. (Technical Digest - International Electron Devices Meeting, IEDM; vol. 2019-December).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Ferroelectric RAM
  • wakes
  • endurance
  • CMOS
  • capacitors
  4 Citations (Scopus)

• From the Himalayas to a continental Island: Integrative species delimitation in the Brownish-flanked Bush Warbler Horornis fortipes complex

  Wei, C., Dong, L., Li, S. H., Alström, P., Liu, Y., Xia, C., Yao, C. T. & Zhang, Y., 2019 Feb, In: Molecular Phylogenetics and Evolution. 131, p. 219-227 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Songbirds
  • Himalayan region
  • Music
  • plumage
  • Islands
  2 Citations (Scopus)

• Standing genetic variation as the predominant source for adaptation of a songbird

  Lai, Y. T., Yeung, C. K. L., Omland, K. E., Pang, E. L., Hao, Y., Liao, B. Y., Cao, H. F., Zhang, B. W., Yeh, C. F., Hung, C. M., Hung, H. Y., Yang, M. Y., Liang, W., Hsu, Y. C., Yao, C. T., Dong, L., Lin, K. & Li, S. H., 2019 Feb 5, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 6, p. 2152-2157 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Songbirds
  • Genetic Variation
  • Wine
  • Population
  • Taiwan
  16 Citations (Scopus)
• 2018

  Can genomic variation explain the extinction of the passenger pigeon?

  Hung, C. M., Zink, R. M. & Li, S. H., 2018 Aug, In: Journal of Avian Biology. 49, 8, e01858.

  Research output: Contribution to journal › Article › peer-review
  1 Citation (Scopus)

• The effects of food and parasitism on reproductive performance of a wild rodent

  Shaner, P. J. L., Yu, A. Y., Li, S. H. & Hou, C. H., 2018 Apr 1, In: Ecology and Evolution. 8, 8, p. 4162-4172 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • parasite intensity
  • parasitism
  • rodent
  • ivermectin
  • food availability

• The first set of universal nuclear protein-coding loci markers for avian phylogenetic and population genetic studies

  Liu, Y., Liu, S., Yeh, C. F., Zhang, N., Chen, G., Que, P., Dong, L. & Li, S. H., 2018 Dec 1, In: Scientific reports. 8, 1, 15723.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Population Genetics
  • Nuclear Proteins
  • Birds
  • Genome
  • Avian Proteins
  3 Citations (Scopus)
• 2017

  Himalayan black bulbuls (Hypsipetes leucocephalus niggerimus) exhibit sexual dichromatism under ultraviolet light that is invisible to the human eye

  Hung, H. Y., Yeung, C. K. L., Omland, K. E., Yao, C. T., Yao, C. J. & Li, S. H., 2017 Apr 6, In: Scientific reports. 7, 43707.

  Research output: Contribution to journal › Article › peer-review

  • Pycnonotidae
  • ultraviolet radiation
  • eyes
  • skin (animal)
  • sexual selection
  1 Citation (Scopus)

• Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

  Dong, F., Hung, C. M., Li, X. L., Gao, J. Y., Zhang, Q., Wu, F., Lei, F. M., Li, S. H. & Yang, X. J., 2017 Dec 6, In: BMC evolutionary biology. 17, 1, p. 244 1 p., 244.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • avifauna
  • Last Interglacial
  • ice
  • climate change
  • climate
  10 Citations (Scopus)

• Reconstructing the geographic origin of the New World jays

  Fernando, S. W., Peterson, A. T. & Li, S. H., 2017 Jan 1, In: Neotropical Biodiversity. 3, 1, p. 80-92 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • provenance
  • phylogeny
  • world
  • Central America
  • mitochondrial genes
  3 Citations (Scopus)

• Spacing behaviors and spatial recruitment of a wild rodent in response to parasitism

  Shaner, P. J. L., Yu, A. Y., Ke, L. & Li, S. H., 2017 Apr, In: Ecosphere. 8, 4, e01780.

  Research output: Contribution to journal › Article › peer-review

  • parasitism
  • rodent
  • species recruitment
  • spacing
  • rodents
  4 Citations (Scopus)
• 2016

  Development of 22 polymorphic microsatellite markers for Taipei grass frogs (Hylarana taipehensis)

  Chang, Y. C., Li, S. H., Lin, H. Y., Chen, S. L. & Chang, M. H., 2016 Jan 1, In: Amphibia Reptilia. 37, 1, p. 117-120 4 p.

  Research output: Contribution to journal › Article › peer-review

  • frog
  • frogs
  • grass
  • marker
  • microsatellite repeats
  1 Citation (Scopus)

• Incipient speciation with gene flow on a continental island: Species delimitation of the Hainan Hwamei (Leucodioptron canorum owstoni, Passeriformes, Aves)

  Wang, N., Liang, B., Wang, J., Yeh, C. F., Liu, Y., Liu, Y., Liang, W., Yao, C. T. & Li, S. H., 2016 Sep 1, In: Molecular Phylogenetics and Evolution. 102, p. 62-73 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Passeriformes
  • Garrulax canorus
  • incipient speciation
  • Gene Flow
  • Aves
  6 Citations (Scopus)

• Isolation and characterisation of 20 microsatellite loci from the Chinese green tree viper Trimeresurus stejnegeri stejnegeri

  Chang, Y. C., Lin, H. C., Li, S. H. & Chang, M. H., 2016, In: Amphibia Reptilia. 37, 1, p. 126-130 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Trimeresurus
  • Viperidae
  • marker
  • microsatellite repeats
  • loci

• Sino-Himalayan mountains act as cradles of diversity and immigration centres in the diversification of parrotbills (Paradoxornithidae)

  Liu, Y., Hu, J., Li, S. H., Duchen, P., Wegmann, D. & Schweizer, M., 2016 Aug 1, In: Journal of Biogeography. 43, 8, p. 1488-1501 14 p.

  Research output: Contribution to journal › Article › peer-review

  • immigration
  • niches
  • mountains
  • radiation
  • mountain
  20 Citations (Scopus)
• 2015

  Brightness of melanin-based plumage coloration is a cue to oxidative stress in Himalayan Black Bulbuls (Hypsipetes leucocephalus nigerrimus)

  Hung, H. Y. & Li, S. H., 2015 Dec 23, In: Avian Research. 6, 1, 26.

  Research output: Contribution to journal › Article › peer-review

  • plumage
  • Pycnonotidae
  • melanin
  • oxidative stress
  • color
  3 Citations (Scopus)

• Climate niche differentiation between two passerines despite ongoing gene flow

  Shaner, P. J. L., Tsao, T. H., Lin, R. C., Liang, W., Yeh, C. F., Yang, X. J., Lei, F. M., Zhou, F., Yang, C. C., Hung, L. M., Hsu, Y. C. & Li, S. H., 2015 May 1, In: Journal of Animal Ecology. 84, 3, p. 829-839 11 p.

  Research output: Contribution to journal › Article › peer-review

  • passerine
  • ecological differentiation
  • gene flow
  • niche
  • niches
  12 Citations (Scopus)

• Dawn chorus variation in East-Asian tropical montane forest birds and its ecological and morphological correlates

  Chen, W. M., Lee, Y. F., Tsai, C. F., Yao, C. T., Chen, Y. H., Li, S. H. & Kuo, Y. M., 2015, In: Contributions to Zoology. 84, 3, p. 255-265 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • montane forest
  • montane forests
  • tropical forests
  • tropical forest
  • bird
  2 Citations (Scopus)

• Revival of the genus TropicoperdixBlyth 1859 (Phasianidae, Aves) using multilocus sequence data

  Chen, D., Liu, Y., Davison, G. W. H., Dong, L., Chang, J., Gao, S., Li, S. H. & Zhang, Z., 2015 Oct 1, In: Zoological Journal of the Linnean Society. 175, 2, p. 429-438 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Phasianidae
  • Aves
  • uncertainty
  • phylogenetics
  • partridges
  12 Citations (Scopus)

• The genetic relatedness in groups of joint-nesting Taiwan yuhinas: Low genetic relatedness with preferences for male kin

  Liu, M., Zhong, Q. D., Cheng, Y. R., Li, S. H., Fang, S., Pu, C. E., Yuan, H. W. & Shen, S. F., 2015 Jun 18, In: PloS one. 10, 6, 0127341.

  Research output: Contribution to journal › Article › peer-review

  • joints (animal)
  • Microsatellite Repeats
  • Taiwan
  • Animals
  • genetic relationships
  2 Citations (Scopus)

• Was the exposed continental shelf a long-distance colonization route in the ice age? The Southeast Asia origin of Hainan and Taiwan partridges

  Chen, D., Chang, J., Li, S. H., Liu, Y., Liang, W., Zhou, F., Yao, C. T. & Zhang, Z., 2015 Feb 1, In: Molecular Phylogenetics and Evolution. 83, p. 167-173 7 p.

  Research output: Contribution to journal › Article › peer-review

  • partridges
  • continental shelf
  • Southeastern Asia
  • Ice
  • Islands
  11 Citations (Scopus)

• Within-island speciation with an exceptional case of distinct separation between two sibling lizard species divided by a narrow stream

  Tseng, S. P., Wang, C. J., Li, S. H. & Lin, S. M., 2015 Sep 1, In: Molecular Phylogenetics and Evolution. 90, p. 164-175 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Lizards
  • lizard
  • Islands
  • lizards
  • 1,2-diarachidonoyl-glycero-3-phosphocholine
  11 Citations (Scopus)
• 2014

  Drastic population fluctuations explain the rapid extinction of the passenger pigeon

  Hung, C. M., Shaner, P. J. L., Zink, R. M., Liu, W. C., Chu, T. C., Huang, W. S. & Li, S. H., 2014 Jul 22, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 29, p. 10636-10641 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Columbidae
  • Population Density
  • Population
  • Birds
  • Biological Extinction
  69 Citations (Scopus)

• Empirical selection of informative microsatellite markers within co-ancestry pig populations is required for improving the individual assignment efficiency

  Li, Y. H., Chu, H. P., Jiang, Y. N., Lin, C. Y., Li, S. H., Li, K. T., Weng, G. J., Cheng, C. C., Lu, D. J. & Ju, Y. T., 2014 May, In: Asian-Australasian Journal of Animal Sciences. 27, 5, p. 616-627 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Microsatellite Repeats
  • Animals
  • ancestry
  • Swine
  • microsatellite repeats
  5 Citations (Scopus)

• Influence of gene flow on divergence dating - Implications for the speciation history of Takydromus grass lizards

  Tseng, S. P., Li, S. H., Hsieh, C. H., Wang, H. Y. & Lin, S. M., 2014 Oct 1, In: Molecular Ecology. 23, 19, p. 4770-4784 15 p.

  Research output: Contribution to journal › Review article › peer-review

  • Gene Flow
  • Lizards
  • Poaceae
  • lizard
  • Population Density
  12 Citations (Scopus)

• Isolation and characterization of 18 microsatellite loci for an endangered fresh water crocodile Tomistoma schlegelii

  Chang, Y. C., Li, S. H., Chang, M. H. & Chen, S. L., 2014 Jun, In: Conservation Genetics Resources. 6, 2, p. 495-498 4 p.

  Research output: Contribution to journal › Letter › peer-review

  • Tomistoma schlegelii
  • Alligators and Crocodiles
  • parentage
  • crocodiles
  • crocodile
  2 Citations (Scopus)

• Molecular systematics and plumage coloration evolution of an enigmatic babbler (Pomatorhinus ruficollis) in East Asia

  Dong, F., Li, S. H., Zou, F. S., Lei, F. M., Liang, W., Yang, J. X. & Yang, X. J., 2014 Jan 1, In: Molecular Phylogenetics and Evolution. 70, 1, p. 76-83 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Pomatorhinus
  • plumage
  • molecular systematics
  • Far East
  • subspecies
  11 Citations (Scopus)

• Past hybridization between two East Asian long-tailed tits (Aegithalos bonvaloti and A. fuliginosus)

  Wang, W., Dai, C., Alström, P., Zhang, C., Qu, Y., Li, S. H., Yang, X., Zhao, N., Song, G. & Lei, F., 2014 May 16, In: Frontiers in Zoology. 11, 1, 40.

  Research output: Contribution to journal › Article › peer-review

  • Aegithalos
  • mitochondrial DNA
  • hybridization
  • Last Glacial Maximum
  • gene flow
  15 Citations (Scopus)

• Species delimitation in the Chinese bamboo partridge Bambusicola thoracica (Phasianidae; Aves)

  Hung, C. M., Hung, H. Y., Yeh, C. F., Fu, Y. Q., Chen, D., Lei, F., Yao, C. T., Yao, C. J., Yang, X. J., Lai, Y. T. & Li, S-H., 2014 Nov 1, In: Zoologica Scripta. 43, 6, p. 562-575 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Thoracica
  • Phasianidae
  • partridges
  • bamboo
  • Aves
  9 Citations (Scopus)

• Testing hypotheses of mitochondrial gene-tree paraphyly: Unravelling mitochondrial capture of the Streak-breasted Scimitar Babbler (Pomatorhinus ruficollis) by the Taiwan Scimitar Babbler (Pomatorhinus musicus)

  Dong, F., Zou, F. S., Lei, F. M., Liang, W., Li, S. H. & Yang, X. J., 2014 Dec 1, In: Molecular Ecology. 23, 23, p. 5855-5867 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Pomatorhinus
  • paraphyly
  • Mitochondrial Genes
  • hypothesis testing
  • mitochondrial genes
  7 Citations (Scopus)
• 2013

  Gene flow maintains genetic diversity and colonization potential in recently range-expanded populations of an oriental bird, the light-vented bulbul (pycnonotus sinensis, aves: Pycnonotidae)

  Song, G., Yu, L., Gao, B., Zhang, R., Qu, Y., Lambert, D. M., Li, S., Zhou, T. & Lei, F., 2013 Oct 1, In: Diversity and Distributions. 19, 10, p. 1248-1262 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Pycnonotus
  • Pycnonotidae
  • Aves
  • gene flow
  • genetic diversity
  16 Citations (Scopus)

• Glacial expansion and diversification of an East Asian montane bird, the green-backed tit (Parus monticolus)

  Wang, W., Mckay, B. D., Dai, C., Zhao, N., Zhang, R., Qu, Y., Song, G., Li, S-H., Liang, W., Yang, X., Pasquet, E. & Lei, F., 2013 Jun, In: Journal of Biogeography. 40, 6, p. 1156-1169 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Parus
  • Last Interglacial
  • bird
  • mitochondrial DNA
  • ecological niche
  49 Citations (Scopus)

• Inferring the geographic mode of speciation by contrasting autosomal and sex-linked genetic diversity

  Chu, J. H., Wegmann, D., Yeh, C. F., Lin, R. C., Yang, X. J., Lei, F. M., Yao, C. T., Zou, F. S. & Li, S. H., 2013 Nov, In: Molecular Biology and Evolution. 30, 11, p. 2519-2530 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Gene Flow
  • gene flow
  • genetic diversity
  • Genetic Variation
  • genetic variation
  15 Citations (Scopus)

• The De Novo Assembly of Mitochondrial Genomes of the Extinct Passenger Pigeon (Ectopistes migratorius) with Next Generation Sequencing

  Hung, C. M., Lin, R. C., Chu, J. H., Yeh, C. F., Yao, C. J. & Li, S. H., 2013 Feb 20, In: PloS one. 8, 2, e56301.

  Research output: Contribution to journal › Article › peer-review

  • Ancient DNA
  • extinct species
  • Mitochondrial Genome
  • Columbidae
  • pigeons
  22 Citations (Scopus)
• 2012

  Characterization of the transcriptome of an ecologically important avian species, the Vinous-throated Parrotbill Paradoxornis webbianus bulomachus (Paradoxornithidae; Aves)

  Chu, J. H., Lin, R. C., Yeh, C. F., Hsu, Y. C. & Li, S. H., 2012 Apr 24, In: BMC Genomics. 13, 1, 149.

  Research output: Contribution to journal › Article › peer-review

  • Wine
  • Birds
  • Finches
  • Chickens
  • Transcriptome
  10 Citations (Scopus)

• Coupling Genetic and Species Distribution Models to Examine the Response of the Hainan Partridge (Arborophila ardens) to Late Quaternary Climate

  Chang, J., Chen, D., Ye, X., Li, S., Liang, W., Zhang, Z. & Li, M., 2012 Nov 19, In: PloS one. 7, 11, e50286.

  Research output: Contribution to journal › Article › peer-review

  • Climate Change
  • partridges
  • Climate
  • Climate change
  • Southeastern Asia
  10 Citations (Scopus)

• Incomplete lineage sorting or secondary admixture: Disentangling historical divergence from recent gene flow in the Vinous-throated parrotbill (Paradoxornis webbianus)

  Qu, Y., Zhang, R., Quan, Q., Song, G., Li, S-H. & Lei, F., 2012 Dec 1, In: Molecular Ecology. 21, 24, p. 6117-6133 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Refugium
  • Gene Flow
  • Wine
  • gene flow
  • sorting
  46 Citations (Scopus)

• Interpreting the Process behind Endemism in China by Integrating the Phylogeography and Ecological Niche Models of the Stachyridopsis ruficeps

  Liu, H., Wang, W., Song, G., Qu, Y., Li, S. H., Fjeldså, J. & Lei, F., 2012 Oct 2, In: PloS one. 7, 10, e46761.

  Research output: Contribution to journal › Article › peer-review

  • Phylogeography
  • phylogeography
  • Ecosystem
  • Mitochondrial DNA
  • niches
  26 Citations (Scopus)